Cre12.g510300 (PFU2, UBC23)

Aliases : PFU2, UBC23

Description : Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana

Gene families : OG0001231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001231_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre12.g510300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00184270	evm_27.TU.AmTr_v1...	Probable ubiquitin-conjugating enzyme E2 24...	0.01	OrthoFinder output from all 47 species
Adi_g089077	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.04	OrthoFinder output from all 47 species
Aev_g01537	UBC25, PFU1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07995	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.03	OrthoFinder output from all 47 species
Ala_g06796	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.02	OrthoFinder output from all 47 species
Als_g33748	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.03	OrthoFinder output from all 47 species
Aob_g06748	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.01	OrthoFinder output from all 47 species
Aspi01Gene10261.t1	PFU2, UBC23,...	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0155.g053602	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.02	OrthoFinder output from all 47 species
Cba_g72571	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.02	OrthoFinder output from all 47 species
Ceric.34G022600.1	PFU2, UBC23,...	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000939.12	No alias	Putative ubiquitin-conjugating enzyme E2 38...	0.03	OrthoFinder output from all 47 species
Dac_g10716	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g13320	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01020551001	UBC25, PFU1	Probable ubiquitin-conjugating enzyme E2 25...	0.02	OrthoFinder output from all 47 species
GSVIVT01024005001	PFU2, UBC23	Probable ubiquitin-conjugating enzyme E2 23...	0.02	OrthoFinder output from all 47 species
Gb_00082	PFU2, UBC23	Probable ubiquitin-conjugating enzyme E2 23...	0.01	OrthoFinder output from all 47 species
Gb_29475	PFU2, UBC23	ubiquitin-conjugating E2 protein (PHO2)	0.02	OrthoFinder output from all 47 species
Gb_38530	UBC24, PHO2, ATUBC24	Probable ubiquitin-conjugating enzyme E2 24...	0.01	OrthoFinder output from all 47 species
LOC_Os01g03520.1	PFU2, UBC23,...	Probable ubiquitin-conjugating enzyme E2 23...	0.02	OrthoFinder output from all 47 species
LOC_Os09g12310.1	UBC25, PFU1,...	Probable ubiquitin-conjugating enzyme E2 25...	0.02	OrthoFinder output from all 47 species
Lfl_g04268	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.03	OrthoFinder output from all 47 species
MA_11973g0010	UBC24, PHO2, ATUBC24	Probable ubiquitin-conjugating enzyme E2 25...	0.01	OrthoFinder output from all 47 species
MA_438875g0010	PFU2, UBC23	ubiquitin-conjugating E2 protein (PHO2)	0.03	OrthoFinder output from all 47 species
Msp_g16178	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.01	OrthoFinder output from all 47 species
Nbi_g01476	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.01	OrthoFinder output from all 47 species
Pp3c15_4860V3.1	PFU2, UBC23, Pp3c15_4860	ubiquitin-conjugating enzyme 23	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003615	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.01	OrthoFinder output from all 47 species
Solyc07g053960.3.1	Solyc07g053960	Probable ubiquitin-conjugating enzyme E2 26...	0.02	OrthoFinder output from all 47 species
Spa_g07086	PFU2, UBC23	E2 ubiquitin-conjugating protein *(PHO2) & original...	0.01	OrthoFinder output from all 47 species
Zm00001e025713_P002	PFU2, UBC23,...	Probable ubiquitin-conjugating enzyme E2 23...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	None	Extended
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
BP	GO:0030832	regulation of actin filament length	IEP	HCCA
BP	GO:0030833	regulation of actin filament polymerization	IEP	HCCA
BP	GO:0032271	regulation of protein polymerization	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	HCCA
BP	GO:0032970	regulation of actin filament-based process	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0110053	regulation of actin filament organization	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019474	Ub_conjug_fac_E4_core	317	1057
IPR000608	UBQ-conjugat_E2	1231	1360

External Links

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Cre12.g510300 (PFU2, UBC23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation