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  5. Cre12.g548000

Cre12.g548000


Description : Uncharacterized protein At3g06530 OS=Arabidopsis thaliana


Gene families : OG0003994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g548000
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00089410 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT3G06530 No alias ARM repeat superfamily protein 0.05 OrthoFinder output from all 47 species
Als_g15136 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Aop_g39223 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene50223.t1 Aspi01Gene50223 SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
Ceric.35G057300.1 Ceric.35G057300 SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000074.2 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g07825 No alias SSU processome assembly factor *(UTP10) & original... 0.01 OrthoFinder output from all 47 species
Dcu_g07784 No alias SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01013976001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os04g46310.1 LOC_Os04g46310 SSU processome assembly factor (UTP10) 0.03 OrthoFinder output from all 47 species
Len_g13951 No alias SSU processome assembly factor *(UTP10) & original... 0.01 OrthoFinder output from all 47 species
MA_10431891g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_735g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp1g06160.1 No alias SSU processome assembly factor (UTP10) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018710 No alias phosphatidylinositol 4-kinase *(PI4K-gamma) & original... 0.02 OrthoFinder output from all 47 species
Sam_g27886 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g40580 No alias SSU processome assembly factor *(UTP10) & original... 0.03 OrthoFinder output from all 47 species
Smo438493 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc03g093480.3.1 Solyc03g093480 SSU processome assembly factor (UTP10) 0.06 OrthoFinder output from all 47 species
Spa_g26502 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Tin_g20111 No alias SSU processome assembly factor *(UTP10) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e016831_P001 Zm00001e016831 SSU processome assembly factor (UTP10) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022125 U3snoRNP10_N 254 372
IPR012954 BP28_C_dom 2175 2365
No external refs found!