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  5. Cre12.g556050

Cre12.g556050


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL9 component


Gene families : OG0005681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005681_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g556050
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT3G44890 RPL9 ribosomal protein L9 0.21 OrthoFinder output from all 47 species
Adi_g052779 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aev_g02007 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g14560 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Aob_g29870 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g01961 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aspi01Gene08814.t1 RPL9, Aspi01Gene08814 component *(bL9c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Azfi_s0116.g046443 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cba_g11053 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.04G054000.1 RPL9, Ceric.04G054000 component *(bL9c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.04G054200.1 RPL9, Ceric.04G054200 component *(bL9c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000169.8 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g04533 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g00712 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dde_g03177 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ehy_g02133 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01031460001 RPL9 Protein biosynthesis.organelle translation... 0.14 OrthoFinder output from all 47 species
Gb_34312 RPL9 component psRPL9 of large ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
LOC_Os02g57670.1 RPL9, LOC_Os02g57670 component psRPL9 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Len_g18180 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Lfl_g00811 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
MA_810522g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_8767694g0010 RPL9 component psRPL9 of large ribosomal subunit proteome 0.12 OrthoFinder output from all 47 species
Mp1g05730.1 RPL9 component psRPL9 of large ribosomal subunit proteome 0.26 OrthoFinder output from all 47 species
Msp_g21781 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Nbi_g27085 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ore_g16241 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pnu_g10443 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Pp3c1_5300V3.1 RPL9, Pp3c1_5300 ribosomal protein L9 0.1 OrthoFinder output from all 47 species
Pp3c1_5320V3.1 RPL9, Pp3c1_5320 ribosomal protein L9 0.04 OrthoFinder output from all 47 species
Pp3c2_34110V3.1 RPL9, Pp3c2_34110 ribosomal protein L9 0.04 OrthoFinder output from all 47 species
Pp3c2_34120V3.1 RPL9, Pp3c2_34120 ribosomal protein L9 0.06 OrthoFinder output from all 47 species
Ppi_g00398 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008686 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g30436 No alias component *(bL9c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g39483 No alias component *(bL9c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Smo270732 RPL9 Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Solyc11g066410.2.1 RPL9, Solyc11g066410 component psRPL9 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Spa_g05781 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Spa_g26242 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Tin_g00502 RPL9 component *(bL9c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e016155_P002 RPL9, Zm00001e016155 component psRPL9 of large ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR020069 Ribosomal_L9_C 99 182
IPR020070 Ribosomal_L9_N 38 82
No external refs found!