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  5. Cre12.g560150

Cre12.g560150 (ATRAB1A, ATRABD2B, RAB1A)


Aliases : ATRAB1A, ATRABD2B, RAB1A

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.D-class RAB GTPase


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g560150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00145590 ATRAB1B, RABD2A,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
AT1G02130 ATRAB1B, RABD2A,... RAS 5 0.02 OrthoFinder output from all 47 species
Adi_g013330 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g046907 RAB1C, ATRAB1C, ATRABD2C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23790 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g24852 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09984 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62085.t2 ATRAB1B, RABD2A,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0027.g023703 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: CDS=1-693 0.05 OrthoFinder output from all 47 species
Azfi_s0028.g023798 RAB1C, ATRAB1C, ATRABD2C not classified & original description: CDS=1-543 0.03 OrthoFinder output from all 47 species
Azfi_s0095.g043564 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: CDS=1193-1804 0.06 OrthoFinder output from all 47 species
Cba_g55676 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G089700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.38G045700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G002700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.10 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Dac_g04081 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g26818 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g23024 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g35830 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g31402 RAB1C, ATRAB1C, ATRABD2C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31403 RAB1C, ATRAB1C, ATRABD2C not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013868001 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.05 OrthoFinder output from all 47 species
Gb_15477 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Gb_26449 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os01g08450.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.05 OrthoFinder output from all 47 species
Len_g10682 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g39512 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g29131 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g00710.1 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Msp_g10383 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46440 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g40698 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14298 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18786 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g17943 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010839 ATRAB1B, RABD2A,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014533 RAB1C, ATRAB1C, ATRABD2C not classified & original description: CDS=274-789 0.03 OrthoFinder output from all 47 species
Solyc01g103370.3.1 ATFP8, RABD1,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Solyc05g052070.3.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.01 OrthoFinder output from all 47 species
Spa_g05573 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48359 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e015303_P001 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e027735_P001 RAB1C, ATRAB1C,... D-class RAB GTPase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 170
No external refs found!