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  5. Cre13.g577500

Cre13.g577500 (VTI12, VTI1B, ATVTI12)


Aliases : VTI12, VTI1B, ATVTI12

Description : Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qb-type SNARE components.VTI group protein


Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g577500
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT3G29100 ATVTI13, VTI13 vesicle transport V-snare 13 0.02 OrthoFinder output from all 47 species
AT5G39510 SGR4, ZIG1,... Vesicle transport v-SNARE family protein 0.03 OrthoFinder output from all 47 species
Adi_g008512 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Adi_g116620 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Aop_g25830 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001214 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036538 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Cba_g08457 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Ceric.06G059500.1 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Dcu_g25235 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.05 OrthoFinder output from all 47 species
LOC_Os01g51120.1 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.02 OrthoFinder output from all 47 species
Len_g03643 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Lfl_g00561 ATVTI13, VTI13 Membrin-group Qb-type SNARE protein & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01158 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Lfl_g21752 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Mp1g12970.1 SGR4, ZIG1,... VTI group Qb-type SNARE protein 0.04 OrthoFinder output from all 47 species
Nbi_g00258 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Pp3c11_5240V3.1 ATVTI13, VTI13,... Vesicle transport v-SNARE family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000290 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Sam_g29467 No alias Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Smo146421 SGR4, ZIG1,... Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Spa_g00661 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.01 OrthoFinder output from all 47 species
Spa_g06947 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Spa_g48510 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Zm00001e020013_P001 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.01 OrthoFinder output from all 47 species
Zm00001e027750_P001 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007705 Vesicle_trsprt_v-SNARE_N 15 93
No external refs found!