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  5. Dac_g09762

Dac_g09762 (emb1354, CDC48C)


Aliases : emb1354, CDC48C

Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g09762

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
AMTR_s00085p00052820 CDC48A, CDC48,... Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.03 OrthoFinder output from all 47 species
Adi_g054679 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05302 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G061700.1 emb1354, CDC48C,... platform ATPase CDC48 & original description:... 0.05 OrthoFinder output from all 47 species
Cre09.g398550 emb1354, CDC48C Cell division control protein 48 homolog C... 0.01 OrthoFinder output from all 47 species
Ehy_g03992 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07885 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09970 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.03 OrthoFinder output from all 47 species
Gb_41085 CDC48B Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g20500.1 CDC48B Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
Ore_g19173 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g068330.4.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Solyc06g074980.3.1 Solyc06g074980 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Spa_g04738 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g12521 CIP111 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000416_P002 Zm00001e000416 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Zm00001e021405_P001 CIP111, Zm00001e021405 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e035514_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Zm00001e041158_P001 CDC48B, Zm00001e041158 Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 881 922
IPR041569 AAA_lid_3 561 595
IPR003959 ATPase_AAA_core 390 536
IPR003959 ATPase_AAA_core 730 858
IPR031996 NVL2_nucleolin-bd 20 82
No external refs found!