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  5. Dac_g10602

Dac_g10602 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease (DCL2) of transacting siRNA pathway & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g10602

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00127000 ATDCL3, DCL3,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 OrthoFinder output from all 47 species
Ala_g13307 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.01 OrthoFinder output from all 47 species
Ala_g21964 DCL1, CAF,... endoribonuclease *(DCL3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68606 DCL1, CAF,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33777.t1 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
Dac_g43749 DCL1, CAF,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030481001 ATRTL1, RTL1 Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
LOC_Os01g37050.1 ATRTL2, RTL2,... Ribonuclease 3-like protein 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_10432726g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
Mp6g09830.1 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Ore_g37606 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Spa_g28946 DCL1, CAF,... endoribonuclease *(DCL3) & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 434 551
IPR011545 DEAD/DEAH_box_helicase_dom 84 245
IPR003100 PAZ_dom 949 1078
IPR000999 RNase_III_dom 1336 1446
IPR000999 RNase_III_dom 1120 1255
No external refs found!