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  5. Dac_g10899

Dac_g10899


Description : component *(bS20c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006775 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006775_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g10899

Target Alias Description ECC score Gene Family Method Actions
AT3G15190 No alias chloroplast 30S ribosomal protein S20, putative 0.03 OrthoFinder output from all 47 species
Aev_g22835 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ala_g08893 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Aob_g06235 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g03027 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Azfi_s0228.g059056 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cba_g11240 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.11G009600.1 Ceric.11G009600 component *(bS20c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cre12.g494750 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Dcu_g37258 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g11872 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01014290001 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Gb_27504 No alias component psRPS20 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os01g48690.1 LOC_Os01g48690 component psRPS20 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g00203 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Lfl_g00868 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_872747g0010 No alias component psRPS20 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Mp7g14740.1 No alias component psRPS20 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Ore_g04849 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Pir_g10569 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009139 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g20147 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Solyc07g062870.3.1 Solyc07g062870 component psRPS20 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Spa_g08226 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Spa_g08227 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Spa_g50703 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Tin_g10912 No alias component *(bS20c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Zm00001e028066_P001 Zm00001e028066 component psRPS20 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004820 glycine-tRNA ligase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006426 glycyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002583 Ribosomal_S20 76 162
No external refs found!