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  5. Dac_g17592

Dac_g17592 (emb1473)


Aliases : emb1473

Description : component *(uL13c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g17592
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AT1G78630 emb1473 Ribosomal protein L13 family protein 0.06 OrthoFinder output from all 47 species
Aev_g00534 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g09807 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g17613 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g00301 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Aspi01Gene67483.t1 emb1473, Aspi01Gene67483 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0224.g058887 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cba_g03008 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.14G072800.1 emb1473, Ceric.14G072800 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cre06.g264350 emb1473 Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Dde_g01255 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ehy_g04479 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01014101001 emb1473 Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Gb_28095 emb1473 component psRPL13 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
LOC_Os01g54540.1 emb1473, LOC_Os01g54540 component psRPL13 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g01005 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Lfl_g03832 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
MA_10433400g0010 emb1473 component psRPL13 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
MA_27171g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g07030.1 emb1473 component psRPL13 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Msp_g09623 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g04003 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g11308 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pnu_g03358 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c24_18330V3.1 emb1473, Pp3c24_18330 Ribosomal protein L13 family protein 0.01 OrthoFinder output from all 47 species
Ppi_g11794 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sam_g16893 No alias component *(uL13c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo7665 emb1473 Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Solyc07g062190.4.1 emb1473, Solyc07g062190 component psRPL13 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Solyc12g014390.3.1 emb1473, Solyc12g014390 component psRPL13 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Spa_g21366 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Tin_g09876 emb1473 component *(uL13c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 99 216
No external refs found!