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  5. Dac_g20470

Dac_g20470 (RPA70D, ATRPA70D)


Aliases : RPA70D, ATRPA70D

Description : component *(RPA1) of RPA presynaptic filament assembly factor complex & original description: none


Gene families : OG0003997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003997_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g20470

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00046110 RPA70B,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.11 OrthoFinder output from all 47 species
AT5G08020 RPA70B, ATRPA70B RPA70-kDa subunit B 0.09 OrthoFinder output from all 47 species
AT5G61000 RPA70D, ATRPA70D Replication factor-A protein 1-related 0.08 OrthoFinder output from all 47 species
Ala_g25088 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.08 OrthoFinder output from all 47 species
Als_g07217 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.07 OrthoFinder output from all 47 species
Als_g08320 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Aop_g21131 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.2 OrthoFinder output from all 47 species
Aspi01Gene25029.t1 RPA70D,... component *(RPA1) of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
Aspi01Gene32891.t1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.08 OrthoFinder output from all 47 species
Ceric.18G083500.1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.13 OrthoFinder output from all 47 species
Cre16.g651000 RPA70D, ATRPA70D Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.06 OrthoFinder output from all 47 species
Dcu_g11388 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.1 OrthoFinder output from all 47 species
GSVIVT01007849001 RPA70B, ATRPA70B Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.08 OrthoFinder output from all 47 species
Gb_17349 RPA70B, ATRPA70B component RPA1 of single-stranded-DNA binding RPA... 0.14 OrthoFinder output from all 47 species
LOC_Os03g11540.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.1 OrthoFinder output from all 47 species
Len_g04778 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.08 OrthoFinder output from all 47 species
Len_g11233 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Lfl_g30854 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.12 OrthoFinder output from all 47 species
MA_10308567g0040 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.03 OrthoFinder output from all 47 species
MA_10327014g0020 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
MA_10331305g0010 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
MA_10356314g0010 No alias Replication protein A 70 kDa DNA-binding subunit B... 0.04 OrthoFinder output from all 47 species
MA_10393806g0010 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.03 OrthoFinder output from all 47 species
Mp2g17030.1 RPA70D, ATRPA70D component RPA1 of single-stranded-DNA binding RPA... 0.12 OrthoFinder output from all 47 species
Msp_g06104 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.12 OrthoFinder output from all 47 species
Nbi_g08948 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.14 OrthoFinder output from all 47 species
Ppi_g40052 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.11 OrthoFinder output from all 47 species
Solyc03g115050.3.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.12 OrthoFinder output from all 47 species
Spa_g41654 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.13 OrthoFinder output from all 47 species
Tin_g07108 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.15 OrthoFinder output from all 47 species
Zm00001e000841_P002 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.08 OrthoFinder output from all 47 species
Zm00001e038720_P001 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004365 NA-bd_OB_tRNA 179 264
IPR007199 Rep_factor-A_N 4 98
IPR013955 Rep_factor-A_C 456 603
IPR031657 REPA_OB_2 297 393
No external refs found!