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  5. Dac_g23449

Dac_g23449 (EIN5, AIN1, XRN4, ATXRN4)


Aliases : EIN5, AIN1, XRN4, ATXRN4

Description : exoribonuclease *(XRN4) & original description: none


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g23449

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00423p00011960 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G42540 XRN2, AtXRN2 exoribonuclease 2 0.02 OrthoFinder output from all 47 species
Adi_g021456 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069080 XRN3, AtXRN3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08290 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g23303 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G061100.1 EIN5, AIN1,... exoribonuclease *(XRN4) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.175 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g42410 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024465001 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ore_g19704 EIN5, AIN1, XRN4, ATXRN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17525 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17366 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 324 421
IPR041412 Xrn1_helical 432 720
IPR004859 Xrn1_N 1 252
No external refs found!