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  5. Dac_g28571

Dac_g28571 (LOP1, TRN1)


Aliases : LOP1, TRN1

Description : not classified & original description: none


Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g28571
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00138540 LOP1, TRN1,... Protein TORNADO 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Als_g52462 LOP1, TRN1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g00814 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26671.t1 LOP1, TRN1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33282.t1 LOP1, TRN1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68465.t1 LOP1, TRN1,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0049.g030702 LOP1, TRN1 not classified & original description: CDS=40-3219 0.04 OrthoFinder output from all 47 species
Azfi_s0252.g060347 LOP1, TRN1 not classified & original description: CDS=1-3489 0.04 OrthoFinder output from all 47 species
Ceric.18G016000.1 Ceric.18G016000 not classified & original description: pacid=50622446... 0.02 OrthoFinder output from all 47 species
Ceric.18G016100.1 LOP1, TRN1,... not classified & original description: pacid=50621243... 0.03 OrthoFinder output from all 47 species
Ceric.18G016400.1 Ceric.18G016400 not classified & original description: pacid=50620952... 0.05 OrthoFinder output from all 47 species
Ceric.18G016500.1 Ceric.18G016500 not classified & original description: pacid=50621773... 0.04 OrthoFinder output from all 47 species
Ceric.20G043500.1 LOP1, TRN1,... not classified & original description: pacid=50566189... 0.05 OrthoFinder output from all 47 species
Dac_g17426 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g20580 LOP1, TRN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g20878 LOP1, TRN1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g40231 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08144 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10111 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g26452 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g46964 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g28705 LOP1, TRN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10860 LOP1, TRN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14563 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g15715 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38222 LOP1, TRN1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g41660 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g42467 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g06746 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46988 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42088 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21926 LOP1, TRN1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g38868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g39802 LOP1, TRN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20985 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR032171 COR 564 709
No external refs found!