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  5. Dac_g32626

Dac_g32626


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g32626

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00085870 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G61680 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g24120 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05795.t1 Aspi01Gene05795 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07325.t1 Aspi01Gene07325 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59341.t1 Aspi01Gene59341 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59347.t1 Aspi01Gene59347 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59354.t1 Aspi01Gene59354 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.13G038200.1 Ceric.13G038200 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G056100.1 VGDH1, Ceric.21G056100 not classified & original description: pacid=50603924... 0.03 OrthoFinder output from all 47 species
GSVIVT01001327001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
LOC_Os04g46740.1 LOC_Os04g46740 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Len_g46556 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
MA_181657g0020 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 152 424
No external refs found!