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  5. Dac_g39907

Dac_g39907


Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g39907

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00109790 PGP11,... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00109940 PGP11,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00056p00132920 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s00076p00195870 PGP1, ABCB1,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AT1G02520 PGP11 P-glycoprotein 11 0.03 OrthoFinder output from all 47 species
AT1G27940 PGP13 P-glycoprotein 13 0.02 OrthoFinder output from all 47 species
AT1G28010 ABCB14, ATABCB14, PGP14 P-glycoprotein 14 0.03 OrthoFinder output from all 47 species
Ala_g27372 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g29011 PGP10 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05759 PGP2 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05763 ABCB19,... subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14092 PGP21 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28385 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18500 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11005 PGP11 subfamily ABCB transporter & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g42964 PGP11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08453.t1 PGP11, Aspi01Gene08453 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene28299.t1 Aspi01Gene28299 subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene32172.t1 PGP2, Aspi01Gene32172 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene42794.t1 ATPGP4, PGP4,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G076400.1 ABCB19,... subfamily ABCB transporter & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g38854 PGP3, MDR3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g25900 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46023 PGP13 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13758 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01006613001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01021365001 PGP9 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
GSVIVT01028256001 PGP11 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Gb_02468 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_02469 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Gb_07563 ABCB19,... subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Gb_10211 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Gb_32125 PGP11 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Gb_33057 ABCB19,... subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Gb_33058 ABCB19,... subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Gb_36497 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
LOC_Os01g18670.1 PGP21, LOC_Os01g18670 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
LOC_Os01g74630.1 PGP11, LOC_Os01g74630 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g09720.1 LOC_Os02g09720 subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_10432922g0010 No alias subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
MA_10436810g0020 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_107576g0010 No alias subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
MA_6870g0010 No alias subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
MA_82945g0030 PGP17 ABC transporter B family member 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_93218g0010 PGP11 ABC transporter B family member 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_937278g0010 PGP17 ABC transporter B family member 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_9589971g0010 PGP10 ABC transporter B family member 10 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp2g11920.1 ABCB19,... subfamily ABCB transporter 0.03 OrthoFinder output from all 47 species
Mp7g04390.1 ATPGP4, PGP4, ABCB4, MDR4 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Mpzg01120.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g17749 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31505 PGP11 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32847 PGP21 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22891 PGP13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27278 No alias subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30543 PGP18 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g33236 ABCB19,... ABC-B-type transporter *(AMN3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38163 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60650 PGP21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g65660 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20355 PGP21 subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c21_18190V3.1 ABCB19,... ATP binding cassette subfamily B19 0.02 OrthoFinder output from all 47 species
Pp3c6_7260V3.1 ABCB19,... ATP binding cassette subfamily B19 0.01 OrthoFinder output from all 47 species
Ppi_g03992 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04001 ABCB19,... subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g22415 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010416 ABCB19,... subfamily ABCB transporter & original description: CDS=327-1289 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018197 ABCB19,... subfamily ABCB transporter & original description: CDS=226-4089 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019194 No alias not classified & original description: CDS=54-1700 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019197 No alias subfamily ABCB transporter & original description: CDS=1-2220 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020710 ABCB19,... not classified & original description: CDS=1-1380 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022862 No alias not classified & original description: CDS=281-511 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023107 PGP2 subfamily ABCB transporter & original description: CDS=729-4781 0.03 OrthoFinder output from all 47 species
Smo419451 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo99885 No alias Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
Solyc06g009280.1.1 PGP11, Solyc06g009280 subfamily ABCB transporter 0.05 OrthoFinder output from all 47 species
Solyc11g067300.2.1 PGP11, Solyc11g067300 subfamily ABCB transporter 0.04 OrthoFinder output from all 47 species
Solyc12g098840.3.1 PGP11, Solyc12g098840 subfamily ABCB transporter 0.02 OrthoFinder output from all 47 species
Spa_g18839 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26470 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56665 ABCB19,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11244 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21567 No alias subfamily ABCB transporter & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0043565 sequence-specific DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 194 462
IPR003439 ABC_transporter-like_ATP-bd 536 681
IPR003439 ABC_transporter-like_ATP-bd 12 48
No external refs found!