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  5. Dac_g42860

Dac_g42860


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g42860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00267110 OSB1,... Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00040p00174700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00046p00214930 CRR22,... Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Adi_g085223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g109885 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12197 OSB1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g44680 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46730 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07498 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05672 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20391 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13404 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40546 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04185.t1 Aspi01Gene04185 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27322.t1 Aspi01Gene27322 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35154.t1 Aspi01Gene35154 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56180.t1 EMB2758, Aspi01Gene56180 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0038.g026305 EMB2758 not classified & original description: CDS=1-1827 0.04 OrthoFinder output from all 47 species
Azfi_s0529.g075791 No alias protein involved in PS-I assembly *(PYG7) & original... 0.04 OrthoFinder output from all 47 species
Cba_g04703 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20773 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g23385 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g27524 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67913 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g71700 EMB2758 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g06433 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g26799 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47718 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05108 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22634 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26464 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g28404 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g36360 No alias ssDNA-binding protein *(OSB) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g46329 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g49997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50967 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015461001 ABCG40, PDR12,... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
LOC_Os01g42280.1 CRR21, LOC_Os01g42280 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
LOC_Os02g46980.1 LOC_Os02g46980 Pentatricopeptide repeat-containing protein At1g31920... 0.08 OrthoFinder output from all 47 species
LOC_Os11g29230.1 CRR22, LOC_Os11g29230 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Len_g21090 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g24715 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28860 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41147 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32919 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g34619 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g12189 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43460 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06230 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g06660 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06798 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g12572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13927 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g17486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38282 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38544 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g05576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16142 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16479 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19780 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26958 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g45078 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04713 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04714 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33169 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53563 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53729 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003208 No alias monogalactosyldiacylglycerol lipase *(HIL1) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004510 No alias not classified & original description: CDS=121-2523 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004577 No alias not classified & original description: CDS=1-1743 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019397 No alias not classified & original description: CDS=1-2220 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g026002 No alias not classified & original description: CDS=74-2389 0.03 OrthoFinder output from all 47 species
Sam_g33428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo173139 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Smo93321 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
Solyc04g076800.3.1 CRR22, Solyc04g076800 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g10323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g16937 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g17850 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g18446 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18963 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57006 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e022253_P001 Zm00001e022253 Pentatricopeptide repeat-containing protein At1g59720,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 178 208
IPR002885 Pentatricopeptide_repeat 383 410
IPR002885 Pentatricopeptide_repeat 49 72
IPR002885 Pentatricopeptide_repeat 515 563
IPR002885 Pentatricopeptide_repeat 412 460
IPR002885 Pentatricopeptide_repeat 75 116
IPR002885 Pentatricopeptide_repeat 278 323
No external refs found!