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  5. Dac_g43623

Dac_g43623


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g43623

Target Alias Description ECC score Gene Family Method Actions
AT1G77150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G40720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g008833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25276 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g46792 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g11260 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g12663 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38788 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g17647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g62017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26992 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g28639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16323 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27127 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g33558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g59941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45825.t1 Aspi01Gene45825 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene69669.t1 CRR22, Aspi01Gene69669 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009022 No alias not classified & original description: CDS=1-2334 0.01 OrthoFinder output from all 47 species
Azfi_s0008.g011626 CRR22 not classified & original description: CDS=1-2025 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012300 No alias not classified & original description: CDS=1-1938 0.03 OrthoFinder output from all 47 species
Azfi_s0077.g038002 No alias not classified & original description: CDS=1-2019 0.03 OrthoFinder output from all 47 species
Azfi_s0168.g054647 No alias not classified & original description: CDS=1-2919 0.03 OrthoFinder output from all 47 species
Azfi_s0171.g055668 No alias not classified & original description: CDS=1-711 0.03 OrthoFinder output from all 47 species
Cba_g16715 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29885 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g74873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G071400.1 CRR22, Ceric.32G071400 not classified & original description: pacid=50598182... 0.03 OrthoFinder output from all 47 species
Dac_g25217 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38568 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40815 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g32689 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g38857 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g40681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43746 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54059 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.01 OrthoFinder output from all 47 species
MA_106123g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_2991g0010 No alias RNA editing factor (MEF12) 0.02 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.01 OrthoFinder output from all 47 species
Msp_g14913 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g17701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g20568 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g45693 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15549 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20273 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g20612 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16061 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17858 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g30911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05695 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12874 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04436 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03881 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05289 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07521 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13334 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g13846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015555 No alias not classified & original description: CDS=1-2496 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018685 No alias not classified & original description: CDS=1-1332 0.04 OrthoFinder output from all 47 species
Smo83339 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Spa_g14333 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23949 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g24963 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38609 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001007_P001 Zm00001e001007 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 604 628
IPR002885 Pentatricopeptide_repeat 300 328
IPR002885 Pentatricopeptide_repeat 330 359
IPR002885 Pentatricopeptide_repeat 126 173
IPR002885 Pentatricopeptide_repeat 226 274
IPR002885 Pentatricopeptide_repeat 428 476
IPR002885 Pentatricopeptide_repeat 529 577
No external refs found!