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  5. Aev_g04341

Aev_g04341


Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g04341
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00089340 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
AT5G14320 No alias Ribosomal protein S13/S18 family 0.06 OrthoFinder output from all 47 species
Adi_g042167 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035921 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.05G059300.1 Ceric.05G059300 component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Dac_g26723 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g44492 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g00682 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_24491 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os03g49710.1 LOC_Os03g49710 component mtRPS13|psRPS13 of small ribosomal subunit... 0.05 OrthoFinder output from all 47 species
Len_g05067 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Len_g07705 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Lfl_g00631 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
MA_10431241g0010 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.02 OrthoFinder output from all 47 species
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.07 OrthoFinder output from all 47 species
Nbi_g15772 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ore_g09656 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g35705 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Pnu_g13107 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ppi_g02591 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Solyc05g005880.2.1 Solyc05g005880 component mtRPS13|psRPS13 of small ribosomal subunit... 0.03 OrthoFinder output from all 47 species
Tin_g04300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e005396_P004 Zm00001e005396 component mtRPS13|psRPS13 of small ribosomal subunit... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
MF GO:0008430 selenium binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 44 152
No external refs found!