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  5. AMTR_s00001p00270600

AMTR_s00001p00270600 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.466

Description : 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia


Gene families : OG0001497 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001497_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00270600
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Ceric.27G027600.1 Ceric.27G027600 not classified & original description: pacid=50605291... 0.02 OrthoFinder output from all 47 species
Ceric.33G026000.1 Ceric.33G026000 not classified & original description: pacid=50607594... 0.04 OrthoFinder output from all 47 species
Dac_g05708 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20118 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430689g0020 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g19710.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pnu_g25040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g005170.2.1 Solyc11g005170 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e004710_P005 Zm00001e004710 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e038994_P002 Zm00001e038994 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 361 431
IPR000504 RRM_dom 268 327
No external refs found!