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  5. AMTR_s00002p00197820

AMTR_s00002p00197820 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.183

Description : RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00197820

Target Alias Description ECC score Gene Family Method Actions
AT2G35410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 OrthoFinder output from all 47 species
AT3G52150 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.06 OrthoFinder output from all 47 species
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.06 OrthoFinder output from all 47 species
Adi_g019288 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g022371 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g022372 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10264 ATRBP31, CP31,... plastidial ribonucleoprotein *(CP33a) & original... 0.05 OrthoFinder output from all 47 species
Ala_g12603 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g39448 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g07067 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07142 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14081 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene12453.t1 Aspi01Gene12453 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010976 No alias not classified & original description: CDS=261-1286 0.03 OrthoFinder output from all 47 species
Azfi_s0037.g026033 No alias not classified & original description: CDS=1-825 0.04 OrthoFinder output from all 47 species
Azfi_s0159.g053948 ATRBP31, CP31,... not classified & original description: CDS=143-1057 0.07 OrthoFinder output from all 47 species
Dac_g21785 ATRBP31, CP31,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g01274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g00421 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05650 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10561 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01007596001 CP31B RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
GSVIVT01013146001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01022600001 PDE322, CP33 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.05 OrthoFinder output from all 47 species
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.1 OrthoFinder output from all 47 species
GSVIVT01032039001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
GSVIVT01032361001 CP31B RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_05747 PDE322, CP33 component psPSRP2 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Gb_28108 CP31B 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
Gb_32176 No alias component psPSRP2 of small ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Gb_33449 No alias component psPSRP2 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
LOC_Os02g57010.1 LOC_Os02g57010 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
LOC_Os03g25960.1 LOC_Os03g25960 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g50110.1 LOC_Os04g50110 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g06450.1 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os08g44290.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.05 OrthoFinder output from all 47 species
LOC_Os09g10760.1 LOC_Os09g10760 component psPSRP2 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
LOC_Os09g39180.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.07 OrthoFinder output from all 47 species
MA_10434075g0010 CP31B component psPSRP2 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
MA_136464g0010 ATRBP31, CP31,... 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
MA_474396g0010 ATRBP31, CP31,... RNA editing factor (CP31) 0.04 OrthoFinder output from all 47 species
MA_482994g0010 CP31B 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 OrthoFinder output from all 47 species
MA_65183g0010 No alias component psPSRP2 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Mp3g24820.1 CP31B RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Msp_g04850 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02906 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g11334 CP31B not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g19963 ATRBP31, CP31,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g27196 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06203 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g33947 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.02 OrthoFinder output from all 47 species
Pp3c24_17170V3.1 Pp3c24_17170 chloroplast RNA-binding protein 29 0.01 OrthoFinder output from all 47 species
Ppi_g02835 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015482 ATRBP31, CP31,... not classified & original description: CDS=157-1524 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021464 CP31B not classified & original description: CDS=19-840 0.05 OrthoFinder output from all 47 species
Sam_g06842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006940.4.1 PDE322, CP33,... 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.07 OrthoFinder output from all 47 species
Solyc03g111840.3.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.04 OrthoFinder output from all 47 species
Solyc08g076840.3.1 Solyc08g076840 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.12 OrthoFinder output from all 47 species
Solyc09g007850.3.1 Solyc09g007850 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.08 OrthoFinder output from all 47 species
Solyc09g090960.4.1 Solyc09g090960 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.07 OrthoFinder output from all 47 species
Spa_g07686 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g07687 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08465 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05046 ATRBP31, CP31,... not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e001824_P002 Zm00001e001824 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e003947_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Zm00001e007101_P002 Zm00001e007101 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.07 OrthoFinder output from all 47 species
Zm00001e010844_P001 Zm00001e010844 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Zm00001e016211_P001 Zm00001e016211 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Zm00001e022086_P002 ATRBP31, CP31,... RNA editing factor (CP31) 0.02 OrthoFinder output from all 47 species
Zm00001e032835_P001 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e033636_P003 Zm00001e033636 component psPSRP2 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e035630_P001 Zm00001e035630 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 182 252
No external refs found!