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  5. AMTR_s00002p00246870

AMTR_s00002p00246870 (BGAL3,...)


Aliases : BGAL3, evm_27.TU.AmTr_v1.0_scaffold00002.334

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000377 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00246870

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00054p00149030 BGAL6, MUM2,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 OrthoFinder output from all 47 species
AMTR_s00138p00054750 BGAL13,... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
AT1G31740 BGAL15 beta-galactosidase 15 0.02 OrthoFinder output from all 47 species
AT2G04060 No alias glycosyl hydrolase family 35 protein 0.02 OrthoFinder output from all 47 species
AT4G26140 BGAL12 beta-galactosidase 12 0.02 OrthoFinder output from all 47 species
AT4G35010 BGAL11 beta-galactosidase 11 0.02 OrthoFinder output from all 47 species
Aev_g13644 BGAL8 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18180 BGAL8 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37646 BGAL1 beta-galactosidase *(BGAL1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20083 BGAL1 EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g31090 BGAL8 EC_3.2 glycosylase & original description: none 0.08 OrthoFinder output from all 47 species
Azfi_s0174.g055941 BGAL8 EC_3.2 glycosylase & original description: CDS=223-2676 0.05 OrthoFinder output from all 47 species
Dcu_g12016 BGAL1 EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g37020 BGAL3 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008835001 BGAL16 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01009791001 BGAL3 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01015038001 BGAL7 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.05 OrthoFinder output from all 47 species
GSVIVT01018853001 BGAL3 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01024031001 BGAL13 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 OrthoFinder output from all 47 species
Gb_35384 BGAL1 Beta-galactosidase 9 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os01g39830.1 BGAL1, LOC_Os01g39830 beta-galactosidase (BGAL) 0.12 OrthoFinder output from all 47 species
LOC_Os01g65460.1 BGAL10, LOC_Os01g65460 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.04 OrthoFinder output from all 47 species
LOC_Os06g42310.1 BGAL15, LOC_Os06g42310 beta-galactosidase (BGAL) 0.02 OrthoFinder output from all 47 species
LOC_Os09g36810.1 BGAL13, LOC_Os09g36810 beta-galactosidase (BGAL) 0.02 OrthoFinder output from all 47 species
Lfl_g15821 BGAL8 EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g24966 BGAL1 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04951 BGAL1 EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g12468 BGAL8 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25743 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Smo269483 BGAL8 Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 OrthoFinder output from all 47 species
Solyc01g110000.3.1 BGAL3, Solyc01g110000 beta-galactosidase (BGAL) 0.06 OrthoFinder output from all 47 species
Solyc11g018490.3.1 BGAL16, Solyc11g018490 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Solyc11g018500.3.1 BGAL16, Solyc11g018500 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Tin_g27424 BGAL8 EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000496_P002 BGAL3, Zm00001e000496 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Zm00001e010258_P001 BGAL11, Zm00001e010258 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Zm00001e024944_P002 BGAL1, Zm00001e024944 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species
Zm00001e037281_P001 BGAL1, Zm00001e037281 beta-galactosidase (BGAL) 0.04 OrthoFinder output from all 47 species
Zm00001e039014_P001 BGAL3, Zm00001e039014 beta-galactosidase (BGAL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 760 836
IPR001944 Glycoside_Hdrlase_35 30 335
No external refs found!