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  5. AMTR_s00002p00271480

AMTR_s00002p00271480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.627

Description : RNA biosynthesis.transcriptional activation.Trihelix transcription factor


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00271480

Target Alias Description ECC score Gene Family Method Actions
Adi_g085245 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36226 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g25951 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2854.g113412 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g08402 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36900 AT-GTL1, GTL1, AT-GTL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26855 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g35326 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_331768g0020 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
MA_79619g0010 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Msp_g06995 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10228 AT-GT2, GT2 zf-HD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10229 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19131 No alias component *(Pcf11) of Cleavage Factor II (CF-IIm)... 0.03 OrthoFinder output from all 47 species
Tin_g40677 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!