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  5. AMTR_s00004p00074220

AMTR_s00004p00074220 (GATA4,...)


Aliases : GATA4, evm_27.TU.AmTr_v1.0_scaffold00004.55

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor


Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00074220
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT3G20750 GATA29 GATA transcription factor 29 0.03 OrthoFinder output from all 47 species
AT3G51080 GATA6 GATA transcription factor 6 0.05 OrthoFinder output from all 47 species
AT4G16141 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT5G26930 GATA23 GATA transcription factor 23 0.04 OrthoFinder output from all 47 species
Adi_g010897 GNC, GATA21 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016252 GATA4 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021303 GATA4 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057963 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058312 GATA4 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067935 GATA12 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088429 GATA22, CGA1, GNL transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g14443 GNC, GATA21 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13178 GATA12 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09936 GNC, GATA21 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09937 GNC, GATA21 transcription factor *(A/B-GATA) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g11283 GATA4 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g48899 GATA4 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05872 GATA22, CGA1, GNL transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12583 GATA9 transcription factor *(A/B-GATA) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene06728.t1 GNC, GATA21,... transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12734.t1 GATA5, Aspi01Gene12734 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22142.t1 BME3-ZF, BME3,... transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene57616.t1 GATA5, Aspi01Gene57616 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69106.t1 GATA4, Aspi01Gene69106 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02619 GATA2 transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05826 GATA9 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15344 GATA15 transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.25G042500.1 GATA22, CGA1,... transcription factor *(A/B-GATA) & original description:... 0.05 OrthoFinder output from all 47 species
Cre10.g435450 GATA1 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Dac_g10781 GATA9 transcription factor *(A/B-GATA) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g23014 GATA4 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05309 GATA9 transcription factor *(A/B-GATA) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g06887 GATA2 transcription factor *(A/B-GATA) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g15306 GATA9 transcription factor *(A/B-GATA) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g18881 GATA12 transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20454 GNC, GATA21 transcription factor *(A/B-GATA) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g34018 GATA12 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47461 GATA5 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06602 GATA9 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06867 GATA9 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14273 GATA4 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g22706 GATA4 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26857 GATA12 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035614001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
Gb_24250 GATA9 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Gb_25568 GATA20 transcription factor (GATA) 0.02 OrthoFinder output from all 47 species
LOC_Os01g74540.1 GATA16, LOC_Os01g74540 transcription factor (GATA) 0.02 OrthoFinder output from all 47 species
LOC_Os02g56250.1 BME3-ZF, BME3,... transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
LOC_Os04g45650.2 GATA5, LOC_Os04g45650 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
LOC_Os05g44400.1 GATA12, LOC_Os05g44400 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Len_g13378 GATA15 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33806 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g36448 GATA9 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54486 GATA12 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27263 GATA17 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434815g0010 GATA4 transcription factor (GATA) 0.02 OrthoFinder output from all 47 species
MA_10436047g0010 GATA17 transcription factor (GATA) 0.04 OrthoFinder output from all 47 species
MA_18616g0010 GATA9 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Mp1g03950.1 GATA9 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Msp_g48249 GATA9 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03972 GATA22, CGA1, GNL transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26719 GATA9 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35809 GATA9 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g14533 GATA9 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15675 GATA15 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02097 GATA9 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06282 GATA5 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000079 GATA9 transcription factor *(A/B-GATA) & original description:... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003575 GATA15 transcription factor *(A/B-GATA) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009072 GATA4 transcription factor *(A/B-GATA) & original description:... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015681 GATA12 transcription factor *(A/B-GATA) & original description:... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016909 GATA9 transcription factor *(A/B-GATA) & original description:... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023073 GATA9 transcription factor *(A/B-GATA) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0211.g025929 GATA22, CGA1, GNL transcription factor *(A/B-GATA) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g39840 No alias transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g060490.4.1 GATA17, Solyc01g060490 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Solyc08g066510.3.1 GATA12, Solyc08g066510 transcription factor (GATA) 0.04 OrthoFinder output from all 47 species
Solyc10g018560.2.1 GATA4, Solyc10g018560 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Spa_g29134 GATA9 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30606 GATA9 transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55775 GATA12 transcription factor *(A/B-GATA) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g43678 GATA12 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005940_P001 GATA4, Zm00001e005940 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Zm00001e006272_P001 GATA17, Zm00001e006272 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Zm00001e007391_P002 GATA5, Zm00001e007391 transcription factor (GATA) 0.03 OrthoFinder output from all 47 species
Zm00001e015260_P001 GATA5, Zm00001e015260 transcription factor (GATA) 0.02 OrthoFinder output from all 47 species
Zm00001e017604_P001 GATA23, Zm00001e017604 transcription factor (GATA) 0.02 OrthoFinder output from all 47 species
Zm00001e026256_P001 GATA23, Zm00001e026256 transcription factor (GATA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR000679 Znf_GATA 213 247
No external refs found!