1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00004p00172400

AMTR_s00004p00172400 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.196

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00172400

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00051710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
AT1G49210 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT2G17450 RHA3A RING-H2 finger A3A 0.03 OrthoFinder output from all 47 species
AT3G43430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G60966 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G41400 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g13299 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g02285 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Aop_g16135 RHA3A RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g22041 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene59447.t1 Aspi01Gene59447 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ceric.09G083000.1 Ceric.09G083000 not classified & original description: pacid=50588443... 0.02 OrthoFinder output from all 47 species
Ceric.12G062900.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.09 OrthoFinder output from all 47 species
Ceric.17G012000.1 Ceric.17G012000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.30G049300.1 Ceric.30G049300 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dde_g06659 ATL5 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
LOC_Os03g22080.1 LOC_Os03g22080 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g11860.1 LOC_Os05g11860 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
LOC_Os10g30310.1 LOC_Os10g30310 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os12g24490.1 LOC_Os12g24490 RING-H2-class E3 ligase 0.01 OrthoFinder output from all 47 species
Lfl_g20892 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
MA_68992g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g06948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10421 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g17146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06078 RHA3B RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g23741 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Smo402335 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 OrthoFinder output from all 47 species
Solyc06g063110.3.1 Solyc06g063110 RING-H2-class E3 ligase 0.2 OrthoFinder output from all 47 species
Spa_g20845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37346 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Tin_g02554 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 72 115
No external refs found!