Aliases : NF-YC3, evm_27.TU.AmTr_v1.0_scaffold00004.302
Description : RNA biosynthesis.transcriptional activation.NF-Y transcription factor complex.NF-YC component
Gene families : OG0001038 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001038_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00004p00270830 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Als_g04895 | HAP5A, NF-YC1, ATHAP5A | component *(NF-YC) of NF-Y transcription factor complex... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene23954.t1 | NF-YC2, ATHAP5B,... | component *(NF-YC) of NF-Y transcription factor complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.13G005300.1 | HAP5A, NF-YC1,... | component *(NF-YC) of NF-Y transcription factor complex... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g02683 | NF-YC2, ATHAP5B, HAP5B | component *(NF-YC) of NF-Y transcription factor complex... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10163039g0010 | HAP5A, NF-YC1, ATHAP5A | component NF-YC of NF-Y transcription factor complex | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g23423 | NF-YC2, ATHAP5B, HAP5B | component *(NF-YC) of NF-Y transcription factor complex... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g48535 | HAP5A, NF-YC1, ATHAP5A | component *(NF-YC) of NF-Y transcription factor complex... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g079870.4.1 | NF-YC3, Solyc01g079870 | component NF-YC of NF-Y transcription factor complex | 0.03 | OrthoFinder output from all 47 species | |
| Solyc06g072040.1.1 | HAP5A, NF-YC1,... | component NF-YC of NF-Y transcription factor complex | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g05929 | HAP5A, NF-YC1, ATHAP5A | component *(NF-YC) of NF-Y transcription factor complex... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g47083 | HAP5A, NF-YC1, ATHAP5A | component *(NF-YC) of NF-Y transcription factor complex... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005622 | intracellular anatomical structure | IEA | Interproscan |
| MF | GO:0043565 | sequence-specific DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | HCCA |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009719 | response to endogenous stimulus | IEP | HCCA |
| BP | GO:0009725 | response to hormone | IEP | HCCA |
| BP | GO:0010033 | response to organic substance | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0016597 | amino acid binding | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0042221 | response to chemical | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| MF | GO:0043177 | organic acid binding | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003958 | CBFA_NFYB_domain | 109 | 172 |
| No external refs found! |
