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  5. AMTR_s00005p00124770

AMTR_s00005p00124770 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00005.37

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00005p00124770
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Als_g11041 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19131 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11619 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000796.23 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021589.29 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Dac_g44524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g31554 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10217744g0010 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder output from all 47 species
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Msp_g15088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012085 No alias not classified & original description: CDS=161-2176 0.02 OrthoFinder output from all 47 species
Smo82212 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0007154 cell communication IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 85 148
No external refs found!