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  5. AMTR_s00007p00020440

AMTR_s00007p00020440 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.2

Description : RNA biosynthesis.transcriptional activation.Trihelix transcription factor


Gene families : OG0000970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00020440
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT5G05550 No alias sequence-specific DNA binding transcription factors 0.03 OrthoFinder output from all 47 species
Aob_g27862 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30168.t1 Aspi01Gene30168 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g00683 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07782 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!