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  5. AMTR_s00007p00041830

AMTR_s00007p00041830 (TCP10,...)


Aliases : TCP10, evm_27.TU.AmTr_v1.0_scaffold00007.18

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00041830

Target Alias Description ECC score Gene Family Method Actions
AT1G53230 TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 0.05 OrthoFinder output from all 47 species
AT2G31070 TCP10 TCP domain protein 10 0.05 OrthoFinder output from all 47 species
AT3G15030 TCP4, MEE35 TCP family transcription factor 4 0.11 OrthoFinder output from all 47 species
AT5G60970 TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 0.03 OrthoFinder output from all 47 species
Aspi01Gene02912.t1 ATTCP24, TCP24,... TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02917.t2 TCP3, Aspi01Gene02917 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G064100.1 ATTCP24, TCP24,... TCP-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ehy_g07892 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008234001 TCP12, BRC2 RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
GSVIVT01011962001 TCP12, BRC2 RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
Gb_30049 TCP2 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Gb_37187 TCP3 transcription factor (TCP) 0.06 OrthoFinder output from all 47 species
LOC_Os03g57190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Ore_g32494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26727 TCP13, TFPD, PTF1 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02212 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 120 191
No external refs found!