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  5. AMTR_s00007p00266670

AMTR_s00007p00266670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.376

Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL17 component


Gene families : OG0002243 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002243_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00266670

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0489.g073517 No alias component *(uL17m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cre03.g181350 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
LOC_Os01g62210.1 LOC_Os01g62210 component mtRPL17 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os05g38580.1 LOC_Os05g38580 component mtRPL17 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Pnu_g30561 No alias component *(uL17m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000456 Ribosomal_L17 17 113
No external refs found!