AMTR_s00007p00266960 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.379

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.SPT20/ADA5 component

Gene families : OG0002206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002206_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00007p00266960

Target	Alias	Description	ECC score	Gene Family Method
Als_g02622	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.02	OrthoFinder output from all 47 species
Aop_g10954	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.02	OrthoFinder output from all 47 species
Cba_g38242	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.03	OrthoFinder output from all 47 species
LOC_Os01g02860.1	LOC_Os01g02860	component SPT20/ADA5 of SAGA transcription co-activator complex	0.04	OrthoFinder output from all 47 species
Lfl_g07703	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.03	OrthoFinder output from all 47 species
Mp2g19910.1	No alias	component SPT20/ADA5 of SAGA transcription co-activator complex	0.03	OrthoFinder output from all 47 species
Msp_g23180	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.03	OrthoFinder output from all 47 species
Ore_g37205	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.02	OrthoFinder output from all 47 species
Pir_g15131	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.02	OrthoFinder output from all 47 species
Sam_g07983	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.02	OrthoFinder output from all 47 species
Spa_g49888	No alias	component *(SPT20/ADA5) of SAGA transcription...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	None	Extended
CC	GO:0000124	SAGA complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0031248	protein acetyltransferase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0070461	SAGA-type complex	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
CC	GO:1902493	acetyltransferase complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021950	Spt20	77	224

External Links

No external refs found!