AMTR_s00007p00267580 (ARF19, IAA22, ARF11,...)

Aliases : ARF19, IAA22, ARF11, evm_27.TU.AmTr_v1.0_scaffold00007.382

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00007p00267580

Target	Alias	Description	ECC score	Gene Family Method
Ala_g05299	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g21621	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g27076	ARF4	transcriptional repressor *(IAA/AUX) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g49574	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g59651	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05880.t1	ARF19, IAA22,...	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene45721.t1	ARF6, Aspi01Gene45721	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene45721.t2	ARF6, Aspi01Gene45721	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0007.g010679	ARF1	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Azfi_s0007.g010950	ARF11	not classified & original description: CDS=1-855	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.04	OrthoFinder output from all 47 species
Cba_g07702	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.35G054000.1	ARF6, Ceric.35G054000	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015035001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01021552001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
LOC_Os02g41800.1	ARF16, LOC_Os02g41800	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g43910.1	ARF10, LOC_Os04g43910	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os05g48870.1	ARF3, ETT, LOC_Os05g48870	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g20412	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g28161	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g29145	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18657	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g04470	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001668	ARF1	ARF-type transcription factor & original description: CDS=1-2553	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002378	ARF1	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Smo117217	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Smo181406	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Smo437944	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Solyc01g096070.3.1	ARF9, Solyc01g096070	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc11g069500.2.1	ARF10, Solyc11g069500	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc12g006350.3.1	ARF6, Solyc12g006350	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e015164_P002	ARF10, Zm00001e015164	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e025163_P001	ARF6, Zm00001e025163	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003873	6-phosphofructo-2-kinase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006000	fructose metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008443	phosphofructokinase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	107	208
IPR003311	AUX_IAA	842	910
IPR010525	ARF_dom	233	316

External Links

No external refs found!

AMTR_s00007p00267580 (ARF19, IAA22, ARF11,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation