AMTR_s00009p00212620 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.144

Description : RNA biosynthesis.transcriptional activation.ARID transcription factor


Gene families : OG0001311 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001311_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00212620

Target Alias Description ECC score Gene Family Method Actions
Als_g04310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31837.t1 Aspi01Gene31837 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009581 No alias not classified & original description: CDS=1-1134 0.02 OrthoFinder output from all 47 species
LOC_Os03g31230.2 LOC_Os03g31230 AT-rich interactive domain-containing protein 2... 0.03 OrthoFinder output from all 47 species
MA_10429133g0010 No alias transcription factor (ARID) 0.03 OrthoFinder output from all 47 species
MA_97450g0010 GYRB3 transcription factor (ARID) 0.03 OrthoFinder output from all 47 species
Pnu_g18733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0144.g022932 No alias not classified & original description: CDS=48-1829 0.02 OrthoFinder output from all 47 species
Solyc05g049960.4.1 Solyc05g049960 transcription factor (ARID) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0010506 regulation of autophagy IEP HCCA
BP GO:0010508 positive regulation of autophagy IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031331 positive regulation of cellular catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA

No InterPro domains available for this sequence

No external refs found!