1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00009p00253970

AMTR_s00009p00253970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.267

No description available


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00253970

Target Alias Description ECC score Gene Family Method Actions
AT3G06330 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene69359.t1 Aspi01Gene69359 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_16779 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g26175 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g12012 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009961 No alias E3 ubiquitin ligase & original description: CDS=391-1818 0.04 OrthoFinder output from all 47 species
Solyc03g006060.3.1 Solyc03g006060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc07g044780.3.1 Solyc07g044780 RING-v-class E3 ligase 0.06 OrthoFinder output from all 47 species
Solyc11g069350.2.1 Solyc11g069350 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Tin_g42112 No alias E3 ubiquiTin ligase & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006950 response to stress IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 13 60
No external refs found!