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  5. AMTR_s00009p00259550

AMTR_s00009p00259550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.311

Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00259550
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AT1G01780 No alias GATA type zinc finger transcription factor family protein 0.07 OrthoFinder output from all 47 species
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.13 OrthoFinder output from all 47 species
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.08 OrthoFinder output from all 47 species
Aev_g22808 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19801 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49721 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51386 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21791 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27190 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22278.t1 WLIM1, Aspi01Gene22278 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04896 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06316 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24841 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G067600.1 WLIM1, Ceric.34G067600 LIM-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g39812 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.09 OrthoFinder output from all 47 species
GSVIVT01026849001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
Gb_11447 WLIM1 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.06 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
LOC_Os10g35930.1 LOC_Os10g35930 transcription factor (LIM) 0.1 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g10239 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25515 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001741 WLIM1 LIM-type transcription factor & original description: CDS=1-612 0.02 OrthoFinder output from all 47 species
Solyc04g077780.3.1 WLIM1, Solyc04g077780 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Solyc05g049870.3.1 Solyc05g049870 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Solyc08g007940.4.1 Solyc08g007940 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Solyc10g017520.3.1 Solyc10g017520 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Solyc11g044740.2.1 WLIM1, Solyc11g044740 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007423_P001 Zm00001e007423 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.06 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.08 OrthoFinder output from all 47 species
Zm00001e030885_P002 WLIM1, Zm00001e030885 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e041310_P001 Zm00001e041310 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005811 lipid droplet IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
CC GO:0012511 monolayer-surrounded lipid storage body IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 107 163
IPR001781 Znf_LIM 10 65
No external refs found!