1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00010p00016450

AMTR_s00010p00016450 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00010.5

Description : Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT6 zeta subunit


Gene families : OG0003995 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003995_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00010p00016450

Target Alias Description ECC score Gene Family Method Actions
AT3G02530 No alias TCP-1/cpn60 chaperonin family protein 0.09 OrthoFinder output from all 47 species
AT5G16070 No alias TCP-1/cpn60 chaperonin family protein 0.07 OrthoFinder output from all 47 species
Adi_g117522 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Aev_g21281 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Als_g01766 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Aop_g03812 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0038.g026142 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Ceric.16G067100.1 Ceric.16G067100 subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.37 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder output from all 47 species
Cre09.g397200 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.05 OrthoFinder output from all 47 species
Dcu_g14364 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01031067001 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.06 OrthoFinder output from all 47 species
Gb_18443 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.04 OrthoFinder output from all 47 species
LOC_Os05g05470.1 LOC_Os05g05470 CCT6 subunit zeta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
Len_g12186 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g01847 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
MA_8438g0020 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
MA_94211g0010 No alias T-complex protein 1 subunit zeta 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp8g07530.1 No alias CCT6 subunit zeta of CCT chaperonin folding complex 0.05 OrthoFinder output from all 47 species
Msp_g10126 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g06183 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Ore_g33910 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.05 OrthoFinder output from all 47 species
Pp3c11_26000V3.1 Pp3c11_26000 TCP-1/cpn60 chaperonin family protein 0.03 OrthoFinder output from all 47 species
Sam_g06491 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Sam_g37510 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Smo158120 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.05 OrthoFinder output from all 47 species
Solyc02g063090.3.1 Solyc02g063090 CCT6 subunit zeta of CCT chaperonin folding complex 0.08 OrthoFinder output from all 47 species
Solyc02g085790.3.1 Solyc02g085790 CCT6 subunit zeta of CCT chaperonin folding complex 0.09 OrthoFinder output from all 47 species
Spa_g18568 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Spa_g18569 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Tin_g00936 No alias subunit zeta *(CCT6) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e010996_P001 Zm00001e010996 CCT6 subunit zeta of CCT chaperonin folding complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 29 528
No external refs found!