AMTR_s00013p00039290 (RPL27,...)

Aliases : RPL27, evm_27.TU.AmTr_v1.0_scaffold00013.7

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component

Gene families : OG0002147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002147_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00013p00039290

Target	Alias	Description	ECC score	Gene Family Method
AT5G40950	RPL27	ribosomal protein large subunit 27	0.08	OrthoFinder output from all 47 species
Adi_g016906	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g26415	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Als_g25736	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Aob_g22562	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aop_g02391	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aspi01Gene07109.t1	Aspi01Gene07109	component *(bL27m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene21594.t1	RPL27, Aspi01Gene21594	component *(bL27c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0004.g008370	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g10062	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.02G065700.1	RPL27, Ceric.02G065700	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021428.4	No alias	50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.47	No alias	50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea	0.01	OrthoFinder output from all 47 species
Cre06.g300800	RPL27	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Dac_g01937	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g13830	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dde_g18021	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g20192	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01033086001	RPL27	Protein biosynthesis.organelle translation...	0.05	OrthoFinder output from all 47 species
Gb_27573	RPL27	component psRPL27 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
LOC_Os01g69950.1	RPL27, LOC_Os01g69950	component psRPL27 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Len_g00370	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Lfl_g00153	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
MA_19490g0010	RPL27	component psRPL27 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Mp5g06170.1	RPL27	component psRPL27 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Msp_g02665	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Nbi_g16845	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Pir_g09149	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ppi_g31967	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009407	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g12739	No alias	component *(bL27c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Smo159042	RPL27	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Solyc11g068820.3.1	RPL27, Solyc11g068820	component psRPL27 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Tin_g00464	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Zm00001e028431_P003	RPL27, Zm00001e028431	component psRPL27 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004784	superoxide dismutase activity	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006801	superoxide metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001684	Ribosomal_L27	57	137

External Links

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AMTR_s00013p00039290 (RPL27,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation