1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00013p00233820

AMTR_s00013p00233820 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00013.185

No description available


Gene families : OG0006632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006632_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00233820
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT3G27180 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 OrthoFinder output from all 47 species
Adi_g086095 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11031 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g12202 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g10599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0288.g063238 No alias not classified & original description: CDS=107-2203 0.05 OrthoFinder output from all 47 species
Ceric.04G110700.1 Ceric.04G110700 not classified & original description: pacid=50631634... 0.04 OrthoFinder output from all 47 species
Dac_g13654 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g37117 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23209 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01033109001 No alias No description available 0.08 OrthoFinder output from all 47 species
LOC_Os01g69120.1 LOC_Os01g69120 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Len_g20894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011875 No alias not classified & original description: CDS=25-1917 0.04 OrthoFinder output from all 47 species
Sam_g10020 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g24259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028451_P001 Zm00001e028451 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0031167 rRNA methylation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR004398 RNA_MeTrfase_RsmD 321 428
No external refs found!