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  5. AMTR_s00013p00256900

AMTR_s00013p00256900 (GRP2, ATGRP2,...)


Aliases : GRP2, ATGRP2, GR-RBP2, evm_27.TU.AmTr_v1.0_scaffold00013.251

Description : RNA processing.organelle machineries.RNA editing.ORRM-type RNA editing factor


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00013p00256900

Target Alias Description ECC score Gene Family Method Actions
AT1G18630 GR-RBP6 glycine-rich RNA-binding protein 6 0.04 OrthoFinder output from all 47 species
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.08 OrthoFinder output from all 47 species
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.03 OrthoFinder output from all 47 species
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.05 OrthoFinder output from all 47 species
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.04 OrthoFinder output from all 47 species
Adi_g043489 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g058531 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108265 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111293 CCR2, ATGRP7,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g08733 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g10511 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20823 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24232 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27510 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g35268 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01069 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00926 GR-RBP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01139 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07242 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g15096 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21798 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18654.t1 GR-RBP3, Aspi01Gene18654 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009790 CCR2, ATGRP7,... not classified & original description: CDS=136-657 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011258 CCR2, ATGRP7,... not classified & original description: CDS=99-740 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031234 No alias not classified & original description: CDS=60-764 0.03 OrthoFinder output from all 47 species
Cba_g01674 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10906 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38953 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g48214 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g55211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G002500.1 Ceric.09G002500 RNA chaperone *(RZ1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G070400.1 CCR2, ATGRP7,... not classified & original description: pacid=50608368... 0.03 OrthoFinder output from all 47 species
Cre01.g032300 PAB2, PABP2, ATPAB2 No description available 0.02 OrthoFinder output from all 47 species
Cre09.g392350 GRP2, ATGRP2, GR-RBP2 Glycine-rich RNA-binding protein 2, mitochondrial... 0.02 OrthoFinder output from all 47 species
Dac_g02153 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g09825 GR-RBP4, GRP4 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dac_g10484 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g33383 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g00500 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08529 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g48605 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g17136 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025527001 No alias Organelle RRM domain-containing protein 2, mitochondrial... 0.02 OrthoFinder output from all 47 species
Gb_03401 ATRZ-1A Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_37118 GRP2, ATGRP2, GR-RBP2 RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Len_g07508 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g00072 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05878 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24303 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25551 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436424g0010 ATRZ-1A RNA chaperone (RZ1|GR-RBP) 0.08 OrthoFinder output from all 47 species
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
MA_77292g0010 No alias RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Mp1g21200.1 GRP2, ATGRP2, GR-RBP2 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Mp6g08160.1 ATRZ-1A RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Msp_g12851 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g29443 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46171 CCR1, GR-RBP8,... RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07678 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03416 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04318 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05753 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12344 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g43693 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20372 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32515 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c4_6610V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.03 OrthoFinder output from all 47 species
Sam_g25482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g33002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35045 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48373 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo140819 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Smo406315 GR-RBP4, GRP4 Glycine-rich RNA-binding protein 2, mitochondrial... 0.02 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.06 OrthoFinder output from all 47 species
Solyc10g047130.2.1 ATRZ-1A, Solyc10g047130 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Solyc10g081180.2.1 GR-RBP3, Solyc10g081180 RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Spa_g06392 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10567 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g12557 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g12968 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22222 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g22687 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00653 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g22300 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30660 GR-RBP3 RNA ediTing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g38016 No alias RNA ediTing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028481_P002 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.05 OrthoFinder output from all 47 species
Zm00001e033010_P001 Zm00001e033010 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Zm00001e035491_P001 GR-RBP5, Zm00001e035491 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 41 111
No external refs found!