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  5. AMTR_s00014p00133450

AMTR_s00014p00133450 (BBD1, ATBBD1,...)


Aliases : BBD1, ATBBD1, evm_27.TU.AmTr_v1.0_scaffold00014.49

Description : Bifunctional nuclease 1 OS=Arabidopsis thaliana


Gene families : OG0001063 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001063_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00014p00133450
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT1G19660 No alias Wound-responsive family protein 0.03 OrthoFinder output from all 47 species
AT1G75380 BBD1, ATBBD1 bifunctional nuclease in basal defense response 1 0.03 OrthoFinder output from all 47 species
Ala_g07082 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g02366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G019300.1 BBD1, ATBBD1,... not classified & original description: pacid=50586572... 0.04 OrthoFinder output from all 47 species
Ceric.22G026600.1 Ceric.22G026600 not classified & original description: pacid=50614244... 0.04 OrthoFinder output from all 47 species
Dac_g24289 BBD1, ATBBD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21453 BBD1, ATBBD1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os01g50622.1 LOC_Os01g50622 Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os08g26870.1 LOC_Os08g26870 Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Mp1g11770.1 BBD1, ATBBD1 Bifunctional nuclease 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26845 BBD1, ATBBD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09798 BBD1, ATBBD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05101 BBD1, ATBBD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g080700.4.1 Solyc04g080700 Bifunctional nuclease 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g29925 BBD1, ATBBD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018013_P001 Zm00001e018013 Bifunctional nuclease 1 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003729 Bi_nuclease_dom 172 232
No external refs found!