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  5. AMTR_s00015p00103810

AMTR_s00015p00103810 (APE1,...)


Aliases : APE1, evm_27.TU.AmTr_v1.0_scaffold00015.28

Description : Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.APE acclimation factor


Gene families : OG0005042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00015p00103810

Target Alias Description ECC score Gene Family Method Actions
Cba_g36758 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.155 APE1 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dcu_g15090 APE1 photosynthetic acclimation APE acclimation factor &... 0.03 OrthoFinder output from all 47 species
Ehy_g07374 APE1 photosynthetic acclimation APE acclimation factor &... 0.02 OrthoFinder output from all 47 species
Pir_g59760 APE1 photosynthetic acclimation APE acclimation factor &... 0.02 OrthoFinder output from all 47 species
Pp3c4_3720V3.1 APE1, Pp3c4_3720 acclimation of photosynthesis to environment 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016876 APE1 photosynthetic acclimation APE acclimation factor &... 0.02 OrthoFinder output from all 47 species
Sam_g16456 No alias photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR021275 DUF2854 107 257
No external refs found!