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  5. AMTR_s00016p00253670

AMTR_s00016p00253670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00016.316

Description : Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum


Gene families : OG0000960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000960_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00016p00253670
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Adi_g124909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G026400.1 Ceric.19G026400 not classified & original description: pacid=50575499... 0.04 OrthoFinder output from all 47 species
Dde_g46974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g26936 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46656 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001638_P001 Zm00001e001638 Desiccation-related protein PCC13-62 OS=Craterostigma... 0.03 OrthoFinder output from all 47 species
Zm00001e040816_P001 Zm00001e040816 Desiccation-related protein PCC13-62 OS=Craterostigma... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!