AMTR_s00017p00164980 (ATPGP4, PGP4, ABCB4,...)

Aliases : ATPGP4, PGP4, ABCB4, MDR4, evm_27.TU.AmTr_v1.0_scaffold00017.81

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00017p00164980

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	OrthoFinder output from all 47 species
AT5G46540	PGP7	P-glycoprotein 7	0.04	OrthoFinder output from all 47 species
Ala_g15862	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g26174	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g39233	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02407	PGP20	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14003	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g23739	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46795.t1	PGP2, Aspi01Gene46795	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene52651.t1	PGP2, Aspi01Gene52651	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0232.g059284	PGP13	subfamily ABCB transporter & original description: CDS=307-4314	0.04	OrthoFinder output from all 47 species
Ceric.14G049900.1	PGP11, Ceric.14G049900	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000025.2	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g12633	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g18848	ABCB19,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dac_g40237	ABCB19,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g33169	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g28161	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46023	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17218	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021365001	PGP9	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01033645001	PGP1, ABCB1, ATPGP1	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01036801001	No alias	ABC transporter B family member 15 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_10211	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Gb_13906	PGP2	subfamily ABCB transporter	0.08	OrthoFinder output from all 47 species
Gb_13908	PGP10	ABC transporter B family member 10 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Gb_23626	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_36497	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os02g46680.1	PGP2, LOC_Os02g46680	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_10432169g0010	PGP11	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_93218g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp2g21430.1	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Msp_g01686	PGP6	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g35589	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g03862	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g37290	PGP11	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g38310	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g43029	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04029	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09820	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c17_16450V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Pp3c21_18190V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Ppi_g07008	ABCB14, ATABCB14, PGP14	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g07333	ATPGP4, PGP4, ABCB4, MDR4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17867	PGP11	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017905	PGP11	not classified & original description: CDS=139-861	0.02	OrthoFinder output from all 47 species
Sam_g04479	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo230688	ABCB19,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Spa_g18285	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g56665	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g06699	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e014797_P002	Zm00001e014797	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e041008_P003	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0009916	alternative oxidase activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	HCCA
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1077	1203
IPR003439	ABC_transporter-like_ATP-bd	409	534

External Links

No external refs found!

AMTR_s00017p00164980 (ATPGP4, PGP4, ABCB4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation