1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00018p00255530

AMTR_s00018p00255530 (ATCEL2, CEL2,...)


Aliases : ATCEL2, CEL2, evm_27.TU.AmTr_v1.0_scaffold00018.170

Description : Endoglucanase 1 OS=Persea americana


Gene families : OG0000240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00018p00255530

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00121890 AtGH9B13,... Endoglucanase 17 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00165730 CEL1, GH9B1,... Endoglucanase 8 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000700 GH9B14, AtGH9B14 not classified & original description: CDS=1-1683 0.06 OrthoFinder output from all 47 species
Ehy_g12625 AtGH9B7, GH9B7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21954 AtGH9B5, GH9B5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40352 AtGH9B8, GH9B8 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g45091 GH9C2, AtGH9C2 class-C endo-1,4-beta-glucanase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c22_22830V3.1 GH9B14,... glycosyl hydrolase 9A4 0.03 OrthoFinder output from all 47 species
Zm00001e026066_P002 AtGH9C3, GH9C3,... Endoglucanase 2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e026190_P002 AtGH9B13,... Endoglucanase 3 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e030964_P003 CEL1, GH9B1,... Endoglucanase 17 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 59 479
No external refs found!