Aev_g05890 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase *(PUB15) & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aev_g05890

Target	Alias	Description	ECC score	Gene Family Method
AT1G23030	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
AT4G21350	PUB8, B80	plant U-box 8	0.02	OrthoFinder output from all 47 species
Aev_g03880	PUB12, AtPUB12	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g02170	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g07682	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0060.g034769	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1-2214	0.02	OrthoFinder output from all 47 species
Cba_g31838	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01024985001	PUB13, ATPUB13	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
LOC_Os01g72600.1	LOC_Os01g72600	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os08g04470.1	PUB8, B80, LOC_Os08g04470	U-box domain-containing protein 8 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_104819g0010	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
MA_85119g0010	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.06	OrthoFinder output from all 47 species
Nbi_g02242	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g33917	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023812	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1-1965	0.02	OrthoFinder output from all 47 species
Solyc05g008230.3.1	Solyc05g008230	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Spa_g48656	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e014377_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Zm00001e031915_P001	Zm00001e031915	U-box domain-containing protein 16 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Zm00001e036734_P001	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	250	288
IPR000225	Armadillo	167	206
IPR003613	Ubox_domain	37	107

External Links

No external refs found!

Aev_g05890 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation