1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00020p00247890

AMTR_s00020p00247890 (NRPC2,...)


Aliases : NRPC2, evm_27.TU.AmTr_v1.0_scaffold00020.120

Description : DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00020p00247890

Target Alias Description ECC score Gene Family Method Actions
Aev_g12335 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ala_g05404 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Ala_g36751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g039092 EMB1989, RPB2, NRPB2 not classified & original description: CDS=1-1137 0.03 OrthoFinder output from all 47 species
Cba_g01330 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.04 OrthoFinder output from all 47 species
Ceric.05G020900.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Dac_g06906 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g02001 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g09431 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Dde_g01758 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g04274 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Msp_g14155 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Pp3c15_19410V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Pp3c16_6070V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Pp3c25_15140V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.02 OrthoFinder output from all 47 species
Pp3c3_35890V3.1 Pp3c3_35890 DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Pp3c9_17790V3.1 EMB1989, RPB2,... DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Tin_g03543 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e041755_P001 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007644 RNA_pol_bsu_protrusion 32 172
No external refs found!