1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00021p00065350

AMTR_s00021p00065350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.30

Description : RNA biosynthesis.transcriptional activation.Trihelix transcription factor


Gene families : OG0000970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00065350
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AT3G11100 No alias sequence-specific DNA binding transcription factors 0.02 OrthoFinder output from all 47 species
LOC_Os01g48320.1 LOC_Os01g48320 transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Solyc12g043090.3.1 Solyc12g043090 transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
Spa_g30897 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!