AMTR_s00021p00119000 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.66

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component

Gene families : OG0007282 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007282_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00021p00119000

Target	Alias	Description	ECC score	Gene Family Method
AT1G29070	No alias	Ribosomal protein L34	0.14	OrthoFinder output from all 47 species
Aev_g01858	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene00839.t1	Aspi01Gene00839	component *(bL34c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Azfi_s0700.g082613	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.11G081600.1	Ceric.11G081600	component *(bL34c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Cre01.g030050	No alias	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
GSVIVT01021193001	No alias	Protein biosynthesis.organelle translation...	0.16	OrthoFinder output from all 47 species
Gb_28936	No alias	component psRPL34 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os01g59060.1	LOC_Os01g59060	component psRPL34 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Len_g11773	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Len_g11774	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Lfl_g00226	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_10435644g0010	No alias	component psRPL34 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Mp1g06530.1	No alias	component psRPL34 of large ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
Msp_g30766	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Pp3c18_19220V3.1	Pp3c18_19220	Ribosomal protein L34	0.02	OrthoFinder output from all 47 species
Pp3c21_6450V3.1	Pp3c21_6450	Ribosomal protein L34	0.01	OrthoFinder output from all 47 species
Ppi_g61745	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010804	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g04499	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Solyc01g056780.3.1	Solyc01g056780	component psRPL34 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Spa_g04308	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Spa_g14614	No alias	component *(bL34c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Zm00001e019534_P001	Zm00001e019534	component psRPL34 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000271	Ribosomal_L34	94	130

External Links

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AMTR_s00021p00119000 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation