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  5. AMTR_s00021p00213680

AMTR_s00021p00213680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00021.189

Description : Reticulon-like protein B18 OS=Arabidopsis thaliana


Gene families : OG0003467 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00021p00213680
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AT2G20590 No alias Reticulon family protein 0.11 OrthoFinder output from all 47 species
AT4G28430 No alias Reticulon family protein 0.06 OrthoFinder output from all 47 species
Aev_g22301 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g59860 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0030.g024361 No alias not classified & original description: CDS=126-2093 0.06 OrthoFinder output from all 47 species
Cba_g05841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.35G033400.1 Ceric.35G033400 not classified & original description: pacid=50581205... 0.11 OrthoFinder output from all 47 species
GSVIVT01020595001 No alias Reticulon-like protein B17 OS=Arabidopsis thaliana 0.13 OrthoFinder output from all 47 species
Gb_25024 No alias Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os02g19990.1 LOC_Os02g19990 Reticulon-like protein B17 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_22853g0010 No alias Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.13 OrthoFinder output from all 47 species
Mp1g14200.1 No alias Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Msp_g08988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18960 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007280 No alias not classified & original description: CDS=1-1662 0.07 OrthoFinder output from all 47 species
Solyc07g053700.4.1 Solyc07g053700 Reticulon-like protein B17 OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
Spa_g02418 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g09371 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g51972 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e022248_P002 Zm00001e022248 Reticulon-like protein B21 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e024730_P001 Zm00001e024730 Reticulon-like protein B17 OS=Arabidopsis thaliana... 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003388 Reticulon 157 314
No external refs found!