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  5. AMTR_s00023p00230220

AMTR_s00023p00230220 (BIN5, RHL2,...)


Aliases : BIN5, RHL2, evm_27.TU.AmTr_v1.0_scaffold00023.183

Description : DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana


Gene families : OG0001338 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001338_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00023p00230220

Target Alias Description ECC score Gene Family Method Actions
Adi_g019848 BIN5, RHL2 component *(TOP6A) of somatic DNA topoisomerase VI... 0.03 OrthoFinder output from all 47 species
Cba_g13584 SPO11-2 component a *(SPO11) of meiotic topoisomerase-VI complex... 0.03 OrthoFinder output from all 47 species
Sam_g15438 No alias component *(TOP6A) of somatic DNA topoisomerase VI... 0.02 OrthoFinder output from all 47 species
Solyc09g007210.4.1 BIN5, RHL2,... DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g00382 BIN5, RHL2 component *(TOP6A) of somatic DNA topoisomerase VI... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006259 DNA metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
InterPro domains Description Start Stop
IPR013049 Spo11/TopoVI_A_N 134 200
No external refs found!