AMTR_s00024p00094630 (EDT1, HDG11, ATHDG11,...)

Aliases : EDT1, HDG11, ATHDG11, evm_27.TU.AmTr_v1.0_scaffold00024.48

Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP IV transcription factor

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00024p00094630

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00265170	PDF2,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
AT3G61150	HDG1, HD-GL2-1	homeodomain GLABROUS 1	0.03	OrthoFinder output from all 47 species
AT4G04890	PDF2	protodermal factor 2	0.04	OrthoFinder output from all 47 species
AT4G21750	ATML1	Homeobox-leucine zipper family protein / lipid-binding...	0.04	OrthoFinder output from all 47 species
Adi_g006830	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g057101	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g080315	HDG2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110417	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g18649	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g15179	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g23646	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g25555	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05720	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g07199	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g16392	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g28349	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g53005	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09754	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27628.t1	ATML1, Aspi01Gene27628	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene57033.t1	ATML1, Aspi01Gene57033	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene70273.t1	PDF2, Aspi01Gene70273	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g009667	PDF2	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0015.g014154	ATML1	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0064.g035524	PDF2	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0131.g049156	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0301.g063735	ATML1	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0591.g078757	ATML1	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s1811.g107141	ATML1	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s2071.g108976	PDF2	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g04722	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.01G001800.1	PDF2, Ceric.01G001800	HD-ZIP IV-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.18G081400.1	ATML1, Ceric.18G081400	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z101600.1	PDF2, Ceric.1Z101600	HD-ZIP IV-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ceric.1Z119300.1	HDG2, Ceric.1Z119300	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.29G064400.1	ATML1, Ceric.29G064400	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g03403	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g11376	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g13002	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g20177	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g18586	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g39944	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01012643001	PDF2	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01029396001	EDT1, HDG11, ATHDG11	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
GSVIVT01030605001	HDG2	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
LOC_Os02g45250.1	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
LOC_Os08g08820.2	PDF2, LOC_Os08g08820	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Len_g11571	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g35701	HDG2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g57949	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g14381	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10318273g0010	HDG2	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
MA_10374232g0010	PDF2	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
MA_10433688g0010	ATML1	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
MA_122121g0010	PDF2	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
MA_16767g0010	PDF2	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
MA_17048g0010	HDG5, HB-7	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
MA_93471g0010	ANL2, AHDP	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Msp_g15753	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g26336	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g11149	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19174	EDT1, HDG11, ATHDG11	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25620	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g37968	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g41009	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g11405	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g09188	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g17562	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g33353	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g63496	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001922	ATML1	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005253	ATML1	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005255	ATML1	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc02g080260.4.1	PDF2, Solyc02g080260	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Solyc03g120620.3.1	GL2, Solyc03g120620	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Solyc06g072310.3.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.07	OrthoFinder output from all 47 species
Solyc10g005330.3.1	PDF2, Solyc10g005330	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
Solyc10g006420.4.1	PDF2, Solyc10g006420	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Spa_g09419	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g16174	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g46298	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g51145	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002453_P001	HDG5, HB-7,...	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Zm00001e017088_P001	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Zm00001e021649_P002	PDF2, Zm00001e021649	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Zm00001e023786_P003	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Zm00001e036212_P002	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Zm00001e039947_P001	HDG2, Zm00001e039947	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
Zm00001e040312_P001	PDF2, Zm00001e040312	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
Zm00001e042218_P002	HDG2, Zm00001e042218	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002913	START_lipid-bd_dom	215	437
IPR001356	Homeobox_dom	18	73

External Links

No external refs found!

AMTR_s00024p00094630 (EDT1, HDG11, ATHDG11,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation