AMTR_s00025p00218280 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00025.301

Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00025p00218280

Target Alias Description ECC score Gene Family Method Actions
Adi_g003717 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g003829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g004094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g005637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g008420 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011924 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g017865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033090 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g034792 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035621 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035684 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049668 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g053631 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g065531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078155 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100686 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g118106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05831 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19303 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26222 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29010 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g51296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g55228 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28661 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41595 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0063.g035318 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1986 0.03 OrthoFinder output from all 47 species
Azfi_s0408.g068470 CRR22 not classified & original description: CDS=1-1812 0.03 OrthoFinder output from all 47 species
Cba_g07667 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31665 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35188 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78225 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.05G099100.1 OTP86, Ceric.05G099100 not classified & original description: pacid=50578500... 0.03 OrthoFinder output from all 47 species
Ceric.25G022800.1 Ceric.25G022800 not classified & original description: pacid=50594192... 0.03 OrthoFinder output from all 47 species
Ceric.34G009900.1 Ceric.34G009900 not classified & original description: pacid=50623876... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Dac_g28137 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g32152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g36655 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g31630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38858 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g01672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36054 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50575 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g51155 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12101 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12147 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_36775 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g05355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15007 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18300 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34158 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15164 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g01336 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43134 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23619 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28126 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g02574 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13363 MEF22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g31112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63652 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g15317 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44678 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59836 EMB2758 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001894 No alias not classified & original description: CDS=1-3489 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0140.g022681 OTP82 not classified & original description: CDS=1-954 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0156.g023639 No alias not classified & original description: CDS=1-2241 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025786 No alias not classified & original description: CDS=42-3869 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026295 REME1 not classified & original description: CDS=1-1695 0.04 OrthoFinder output from all 47 species
Sam_g12246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15522 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.06 OrthoFinder output from all 47 species
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 OrthoFinder output from all 47 species
Smo93439 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Smo98426 REME1 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Solyc09g007430.1.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Solyc11g006940.3.1 Solyc11g006940 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 387 416
IPR002885 Pentatricopeptide_repeat 358 385
IPR002885 Pentatricopeptide_repeat 457 486
IPR002885 Pentatricopeptide_repeat 105 132
IPR002885 Pentatricopeptide_repeat 283 329
IPR002885 Pentatricopeptide_repeat 134 181
No external refs found!